Projects for Math 336, (Dynamical Models in Biology) Fall 2021 (Rutgers University) (Hybrid)

http://sites.math.rutgers.edu/~zeilberg/Bio21/projects.html

Last Update: Dec. 10, 2021

  • PRJECTS WERE DUE DEC. 9, 2021, 8:00pm

    Of course, you are welcome to continue the research during the winter break (and even later), and send me new versions for posting!

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    Projects and Teams

    1. A full Maple implementation of "Dynamic complexity in predator-prey models framed in difference equations" by J.R. Beddington et. al. , Nature v. 255 (1975), pp 58-60. Hopefully also study related papers.

      Team Leader: Hrudai Battini

      Other members: Julian Jimmenez and John Hermitt

      [Suggested by the team members]

      Presentation time: Dec. 10, 2021, 11:00-11:10

      paper    code and data


    2. Investigate numerically (and who knows, even solve) some of the conjectures in this intriguing paper "SI and SIR Epidemic models by Linda J.S. Allen.

      Team Leader: Nikita John

      Other members: Shreya Ghosh, Anne Somalwar

      Presentation time: Dec. 10, 2021, 11:12-11:22

      paper    code and data    maple worksheet


    3. Investigate numerically (and who knows, even solve), some of the conjectures, and similar ones, in this intriguing paper "Convergence to Periodic Solution" by A.M. Amleh and G. Ladas

      Team Leader: Charles Griebell

      Other member: Julian Herman

      Presentation time: Dec. 10, 2021, 11:24-11:34

      paper    code and data    maple worksheet


    4. Study numerically the ultimate perodic orbits for various parameters of the generalized discrete Logistic Equation

      x(n)=k x(n-1)(1-x(n-1)).

      These generalizations should have more parameters. For exampla:

      x(n)=k x(n-1)^a (1-x(n-1))^b ,

      that has three parameters (k, a, and b). Also study second- (and higher-) order difference equations, e.g.

      x(n)=k x(n-1)(1-x(n-1))(1-x(n-2)) ,

      and more generally

      x(n)=k x(n-1)^a(1-x(n-1))^b(1-x(n-2))^c ,

      etc.

      Team Leader (and only member): Jeton Hida

      Presentation time: Dec. 10, 2021, 11:36-11:46

      paper    code and data   


    5. Investigate at depth, both numerically and analytically, generalizations of the Hardy-Weinberg rule with with more realistic assumptions.

      Team Leader: Anusha Nagar

      Other member: Tim Nasralla, Nicholas Dimarzio, Deven Singh

      Presentation time: Dec. 10, 2021, 11:48-11:58

      paper    code and data   


    6. Using procedures

      GeneNet(a0,a,b,n,m1,m2,m3,p1,p2,p3) and TimeSeries(F,x,pt,h,A,i)

      in the Maple package DMB.txt

      Investigate, at depth, the gene network model described in Chapter 4 of the Ellner-Guckenheimer book

      Draw may diagrams like those in figures 4.2,4.3, 4.4 in that book, and try to group the `parameter space' into the `periodic case', giving diagrams like figure 4.2, and the `stable equilibrium' case, giving diagrams like figure 4.3.

      Team Leader:Alan Ho

      Other members: Maxim Mekhanikov, Mudassir Lodi

      Presentation time: Dec. 10, 2021, 12:00-12:10

      paper    code and data   


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